SRR3126890.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126890.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1896753
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48439	2.553785337363378	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	5670	0.298931911535134	No Hit
CGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	4933	0.2600760352033185	RNA PCR Primer, Index 38 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT	4304	0.22691410004360082	No Hit
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	4176	0.22016572532111456	RNA PCR Primer, Index 38 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2913	0.15357824661408206	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	2873	0.1514693795133051	RNA PCR Primer, Index 38 (95% over 23bp)
CGTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	2230	0.11756934086831548	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTC	2186	0.11524958705746081	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	16900	90.27148	1
AGGGTAC	1085	76.23551	5
AAGGGTC	2020	75.38206	4
GTACGGG	425	74.08816	2
AGGGTAT	1625	74.03907	5
GTAGGGT	975	73.74791	3
ACGGGAT	480	73.433525	4
TAGCGGG	1060	73.154495	2
AAGGGTA	1980	72.86979	4
ATAGCGG	460	72.631454	1
TAGGGTC	830	71.91177	4
AGGGATG	2655	71.69103	5
GAGGGTA	1520	71.42377	4
AGAGGGT	2765	71.04672	3
GGGTACG	200	70.496185	6
ATAAGGG	2440	70.30172	2
GGGCGAT	840	69.93668	6
ATGCGGG	820	69.9212	2
TAGGGCG	345	69.4745	4
TAAGGGT	1360	69.11208	3