SRR3126878.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126878.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2528215
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27963	1.1060372634447624	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4180	0.16533404002428592	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3348	0.13242544641179646	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	3041	0.1202824917975726	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	3030	0.11984740221856131	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTG	2945	0.1164853463807469	No Hit
CGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT	2798	0.11067096746123252	No Hit
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTG	2732	0.10806042998716485	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2654	0.10497524933599396	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	10625	85.86156	1
ACGGGAT	810	77.75101	4
AGGGATG	4045	73.548096	5
ATAGGGC	1595	73.36963	3
ACGGGTA	280	72.17664	4
AGAGGGC	3430	71.25033	3
TAAGGGA	2270	70.80728	3
ATAGGGA	2445	70.54478	3
GTAGGGC	1080	70.49673	3
TATAGGG	1805	70.04107	2
TAGGGCA	1290	69.95162	4
TAGGGAC	1270	69.943016	4
GAATAGG	1670	69.62327	1
AAGGGTA	1375	69.045425	4
AGTAAGG	1590	68.68546	1
TAGAGGG	4605	68.68519	2
AGTAGGG	4225	68.6335	2
AAGGGAC	2145	68.36181	4
ATAGAGG	1770	68.083305	1
GGTAAGG	1545	67.94388	1