SRR3126871.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126871.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1251645
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7215	0.5764414031135027	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	5957	0.47593367128858416	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3981	0.3180614311565979	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	3033	0.24232110542526034	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	2718	0.21715422503984758	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	2573	0.205569470576721	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	2315	0.18495659711819246	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2274	0.18168090792517047	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1551	0.12391692532627062	No Hit
GGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAGTATTTGCA	1460	0.11664649321492915	No Hit
AAAGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTT	1260	0.10066752154165119	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAGGGCG	205	85.07869	4
CGTTTTT	2990	85.0362	1
GGTAAGG	640	84.762566	1
ACGGGTA	140	84.17534	4
CGAAGGG	1015	81.27599	2
CGCTACG	850	80.96677	3
AGTACGG	205	80.537926	1
GCTACGA	845	80.33017	4
AGGGATG	2075	80.17151	5
TCCGCTA	860	79.534546	1
CTACGAC	865	78.774704	5
CTAACGG	90	78.62035	1
TACGGGT	90	78.563644	3
TAAGGGA	1085	78.2016	3
CGACCAA	845	77.858536	8
ATAGAGG	865	77.43878	1
AGACGGG	790	76.37886	2
TAGCGGG	550	76.28121	2
TGTAGGG	930	75.525505	2
AGGGATT	1295	75.11652	5