Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126865.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2034211 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13372 | 0.657355603720558 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 4154 | 0.20420693821830674 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 4007 | 0.19698054921539607 | No Hit |
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT | 2495 | 0.12265197661402874 | No Hit |
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG | 2096 | 0.10303749217755681 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 5555 | 0.0 | 83.029015 | 1 |
ACGGGAT | 545 | 0.0 | 74.37747 | 4 |
CGTAGGG | 465 | 0.0 | 73.996185 | 2 |
AGGGATG | 2700 | 0.0 | 72.05627 | 5 |
ATAGGGC | 1420 | 0.0 | 72.02957 | 3 |
GTACGGG | 615 | 0.0 | 71.27665 | 2 |
TAGGGCA | 1040 | 0.0 | 71.15505 | 4 |
AGTAGGG | 3550 | 0.0 | 70.76823 | 2 |
ATAGCGG | 395 | 0.0 | 70.44173 | 1 |
TAGGGCG | 390 | 0.0 | 70.09755 | 4 |
CGAAGGG | 1955 | 0.0 | 69.67717 | 2 |
GGTAAGG | 1305 | 0.0 | 69.385025 | 1 |
TAAGGGA | 1850 | 0.0 | 69.300545 | 3 |
TAGGGTA | 710 | 0.0 | 69.04217 | 4 |
TAGCGGG | 985 | 0.0 | 68.428856 | 2 |
AGAGGGC | 2775 | 0.0 | 68.11156 | 3 |
GTAGGGC | 900 | 0.0 | 68.08325 | 3 |
TGTAGGG | 1755 | 0.0 | 67.94897 | 2 |
AGTACGG | 355 | 0.0 | 67.75118 | 1 |
ATGAGGG | 3080 | 0.0 | 67.64115 | 2 |