SRR3126859.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126859.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1684596
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8355	0.4959646110996346	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6477	0.38448387625282265	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	6341	0.37641072399554554	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	5059	0.3003093916879774	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG	4085	0.2424913747865957	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG	3652	0.21678788267335314	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	3587	0.2129293907856839	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	3502	0.20788367062488572	No Hit
AAAGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT	1974	0.11717943055783107	No Hit
CGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	1714	0.10174546300715423	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTAGGG	550	89.18648	2
ATAGCGG	230	86.188126	1
CGTTTTT	4265	85.32206	1
CGGGATA	225	83.541916	5
CGCTACG	1195	82.88325	3
ACGGGAT	420	81.976425	4
CTAACGG	110	81.52427	1
GCTACGA	1220	80.79823	4
AGTAAGG	955	80.55829	1
AGGGATG	3225	80.43338	5
AGGGCAT	1540	80.253136	5
CGAAGGG	1430	79.81925	2
TAGCGGG	800	79.00292	2
CTACGAC	1265	78.38246	5
TCCGCTA	1285	78.23525	1
TAGGGCG	205	78.224075	4
GGTAAGG	1065	77.999	1
GGATGGC	2070	77.639496	7
AGAGGGT	1350	77.21007	3
GGGCGAT	670	77.15158	6