SRR3126858.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126858.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1690250
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7999	0.4732436030173051	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6351	0.3757432332495193	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	5989	0.3543262830942169	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	5097	0.30155302470048806	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG	4166	0.24647241532317704	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTG	3620	0.21416950155302472	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	3592	0.21251294187250408	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	3297	0.19505990238130455	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCTAGGAAT	2783	0.16465019967460434	No Hit
AAAGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT	1901	0.1124685697382044	No Hit
CGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	1716	0.10152344327762167	No Hit
AGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	1694	0.1002218606714983	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCTACG	1135	86.543045	3
CGTAGGG	545	85.42099	2
CGTTTTT	3970	84.888145	1
GCTACGA	1165	83.91104	4
CGAAGGG	1470	83.812706	2
TAGCGGG	685	83.0655	2
TCCGCTA	1190	83.06095	1
CTACGAC	1190	82.14821	5
GCGTAGG	330	81.29905	1
AGAGGGT	1260	80.195435	3
AGGGATG	3565	80.02227	5
CTAACGG	165	79.87275	1
CTAGCGG	130	79.65332	1
TAAGGGA	1530	79.25195	3
TACGACC	1235	79.15496	6
GGATGGC	1990	79.11766	7
ATAGCGG	250	79.07402	1
GGTAAGG	1000	77.66199	1
AAGGGAC	1395	77.48817	4
AGGGCAT	1535	77.46292	5