SRR3126850.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126850.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2460978
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19115	0.7767237252832004	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4930	0.20032686192237395	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4650	0.18894927138722897	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4596	0.18675502178402245	No Hit
GCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	2993	0.1216183159703175	TruSeq Adapter, Index 14 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	2786	0.11320702582469244	Illumina PCR Primer Index 3 (95% over 23bp)
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2728	0.110850239213841	No Hit
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	2629	0.10682744827462903	TruSeq Adapter, Index 14 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6740	83.826065	1
ATAGCGG	510	83.22513	1
CGTAGGG	625	82.96091	2
ACGGGAT	625	74.66482	4
AGGGTAC	1110	74.51178	5
GAGGGTA	1315	73.841805	4
AGGGCAT	2300	73.758934	5
AGTAAGG	1290	73.48328	1
AAGGGTA	1780	72.82383	4
AGGGATG	3095	71.97024	5
CGAAGGG	2115	71.76395	2
AGTAGGG	4360	71.67833	2
GTAGGGC	990	70.94339	3
ATAGGGC	1270	70.89089	3
AGAGGGC	3235	70.668884	3
AGGGTAG	1045	70.60226	5
AAGGGAC	2110	70.59361	4
TAAGGGA	1950	70.58446	3
AGGGCAC	1660	69.92365	5
TAGGGCA	1320	69.276924	4