SRR3126838.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126838.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1665287
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47878	2.8750599746470127	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	5083	0.3052326716055551	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	5056	0.30361132945852576	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4381	0.263077775782793	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	4149	0.24914624326017076	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2646	0.15889153040887247	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	2492	0.14964387519989047	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	2424	0.1455604949777426	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	2112	0.12682498572318165	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	14420	89.851685	1
TAGGGCA	835	70.59367	4
AGGGCAT	1245	70.58285	5
TAGCGGG	820	70.15978	2
GTAGGGC	800	69.55595	3
AGAGGGC	2265	69.537735	3
AGTAGGG	2505	69.08768	2
GGTAAGG	885	68.77607	1
AGTAAGG	1085	68.70973	1
GTAGGGT	605	68.59138	3
ATAGGGC	1110	67.97344	3
GACCGAT	125	67.66895	8
ACGGGAT	455	67.36653	4
AGGGAAT	2015	67.16521	5
TAACGGG	520	67.10744	2
TAAGGGA	1315	67.05916	3
CGTAGGG	465	66.93191	2
TAGTAGG	705	66.92707	1
GAATAGG	935	66.61212	1
ACGGGTA	170	66.57399	4