SRR3126837.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126837.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1669780
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45727	2.7385044736432342	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	5019	0.3005785193258992	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	4954	0.2966857909425194	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4259	0.25506354130484254	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	4239	0.25386577872534105	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2735	0.16379403274682894	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	2634	0.15774533172034638	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	2513	0.1504988681143624	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	2277	0.13636526967624477	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	14210	89.243774	1
ATAGGGC	1145	73.062454	3
AGTAGGG	2395	71.65974	2
ATAGCGG	310	71.34268	1
ACGGGAT	425	69.66768	4
TAGCGGG	785	69.48262	2
TAGGGCA	965	69.15773	4
ATAGGGA	1375	68.36079	3
AATAGGG	2310	67.98645	2
CGTTTCT	770	67.8337	1
GACCGAT	125	67.67718	8
AGGGTAC	620	67.46493	5
AGGGCAT	1230	67.24922	5
AGAGGGC	2665	67.19044	3
GTACGGG	365	66.988205	2
GGGCGAT	690	66.75083	6
AGGGAAT	1945	66.6913	5
TAGAGGG	3070	66.62523	2
GAGGGTA	820	66.48503	4
GAATAGG	1015	66.29538	1