SRR3126836.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126836.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1774225
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48296	2.7220899265876652	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	5415	0.3052036804802097	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	5258	0.2963547464385859	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	4416	0.2488974059096225	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4335	0.24433203229579115	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2842	0.16018261494455324	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	2760	0.15556087869351407	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	2492	0.14045569192182503	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	2367	0.13341036227085065	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	14955	88.62059	1
ATAGGGC	1190	74.24418	3
AGGGATG	1910	72.82992	5
GTAGGGC	840	72.17087	3
GGGCGAT	705	71.99232	6
TAGGGCA	1005	71.5446	4
AGTAGGG	2565	71.08793	2
ATAGCGG	390	69.992546	1
GTACGGG	425	69.663155	2
AGGGCAT	1245	69.076965	5
GAAGGGC	2395	68.48122	3
ATAGAGG	1145	68.23246	1
CTAACGG	145	68.16159	1
AGTAAGG	1140	67.70604	1
GAATAGG	1100	67.60095	1
AATAGGG	2285	66.84188	2
AGAGGGC	2690	66.736374	3
GTAGGGT	665	66.429	3
ATAGGGA	1415	66.09189	3
AGGGAAT	1985	66.053406	5