SRR3126823.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126823.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1178029
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5212	0.4424339298947649	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4329	0.3674782199759089	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3851	0.32690196930635834	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2383	0.20228704047183899	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2147	0.18225357779816964	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG	1533	0.13013261982514862	No Hit
CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG	1484	0.12597312969375118	No Hit
GGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAGTATTTGCA	1434	0.12172875200865173	No Hit
CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	1257	0.10670365500339975	Illumina Single End Adapter 2 (95% over 21bp)
GAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1254	0.10644899234229378	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAATCGG	50	84.90156	1
AGGGATG	2575	84.1318	5
CGTTTTT	2490	83.537674	1
CGTAGGG	335	83.032265	2
CGAAGGG	970	82.14	2
TAGCGGG	650	81.23522	2
ATAGCGG	200	80.1848	1
GGATGAC	1520	79.45587	7
GTAGGGT	445	79.45523	3
AATGCGG	220	79.32722	1
AACGAGG	330	78.61255	1
TACGGGG	565	78.43332	3
TAGGGTA	385	78.3683	4
CTACGAC	675	77.97416	5
TACGACC	680	77.40083	6
GGGCGAT	420	77.20337	6
GCTACGA	685	77.08122	4
GGATGGC	1990	76.98409	7
AGGGCAA	1050	76.9796	5
ATAGAGG	905	76.61466	1