SRR3126821.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126821.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1230069
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5214	0.4238786604653886	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4252	0.3456716655732321	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4048	0.32908723006595564	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2367	0.19242822963589848	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2229	0.1812093467927409	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG	1867	0.15178010339257392	No Hit
CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTG	1585	0.12885456019133887	No Hit
GGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAGTATTTGCA	1431	0.11633493730839489	No Hit
CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	1415	0.11503419726860852	Illumina Single End Adapter 2 (95% over 21bp)
GAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1281	0.10414049943539753	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AATGCGG	180	88.85713	1
CGTTTTT	2585	84.98499	1
AGGGATG	2535	83.79584	5
ATTGCGG	135	83.63025	1
TAGCGGG	610	81.658745	2
CGTAGGG	360	80.931175	2
CGCTACG	790	80.89813	3
CTAGCGG	105	80.64345	1
GCTACGA	800	80.477585	4
CGAAGGG	1065	79.864845	2
GAATAGG	845	79.05285	1
GGTAAGG	760	78.60967	1
CGAGGGA	535	78.1741	3
TCCGCTA	825	78.118256	1
ATAGCGG	235	78.069725	1
AAGGGCA	1845	77.94161	4
AGGGTAC	420	77.2079	5
ATAGAGG	720	77.096634	1
GGAATGC	985	76.81599	7
AGGGCAT	1110	76.63331	5