SRR3126804.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126804.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1589238
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9735	0.6125577163395288	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	7935	0.49929588897320604	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4685	0.2947953673395678	No Hit
GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG	3054	0.19216756709819424	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2892	0.18197400263522517	No Hit
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	2595	0.16328580111978194	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG	2547	0.16026548572334665	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2526	0.15894409773740623	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	1998	0.12572062837661824	No Hit
AAAGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT	1960	0.12332954535444031	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCTGC	1679	0.10564811563780882	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1662	0.10457842060157133	No Hit

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAGGGTC	345	85.82094	4
ACGGGAT	715	84.79212	4
CTAGCGG	150	84.7042	1
AGGGATG	3515	84.36763	5
CGTTTTT	3705	83.57379	1
TAGCGGG	800	81.105865	2
ATAGCGG	390	80.84303	1
AGGGCGT	170	80.17167	5
AGGGATT	1590	79.51096	5
CGACCAA	1400	79.22382	8
CGCTACG	1420	79.10089	3
AGCGGGT	430	78.692955	3
ACGGGTC	210	78.32864	4
AAGGGTA	1005	78.09482	4
AGGGCGA	765	78.02147	5
GGATGGC	2700	77.980515	7
GAGGGAT	2560	77.6555	4
AGGGAAT	2630	77.55428	5
TCACGGG	170	77.44124	2
TAAGGGA	1485	77.22097	3