SRR3126803.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126803.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1673986
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10282	0.6142225801171575	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	8396	0.5015573606947729	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4834	0.2887718296329838	No Hit
GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG	3344	0.19976272202993337	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2914	0.1740755299028785	No Hit
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	2845	0.16995363163132787	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTG	2810	0.1678628136674978	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2693	0.16087350790269453	No Hit
AAAGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT	2135	0.1275398957936327	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2112	0.1261659297031158	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCTGC	1870	0.11170941692463378	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	3820	84.010445	1
ACGGGAT	625	83.46858	4
AGGGATG	3700	83.199295	5
TAGCGGG	790	81.50055	2
AGTAAGG	855	81.45315	1
TAACGGG	485	81.39629	2
GTAGGGT	515	81.217545	3
AGTACGG	175	80.666916	1
TCCGCTA	1545	80.10129	1
AATCGGG	295	79.655365	2
GGTAAGG	865	79.4235	1
AGGGCGA	905	78.936	5
CTAGCGG	185	78.8501	1
TAGGGTC	370	78.753525	4
GTACGGG	400	78.71942	2
GAGGGAT	2465	77.59925	4
GCTACGA	1570	77.53185	4
CGCTACG	1580	77.33629	3
TAAGGGA	1675	76.878136	3
CTACGAC	1590	76.852196	5