SRR3126802.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126802.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2463262
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14986	0.6083802697398815	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	5307	0.21544602238819907	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	5067	0.20570284443960896	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTG	3376	0.13705403647683437	Illumina PCR Primer Index 7 (95% over 22bp)
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2859	0.11606560731257984	No Hit
CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	2794	0.11342682995150333	TruSeq Adapter, Index 23 (96% over 25bp)
CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTG	2718	0.11034149026778312	Illumina PCR Primer Index 7 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5795	81.79465	1
CGAAGGG	2470	75.373825	2
GGGCGAT	1020	73.25499	6
AGTAAGG	1725	71.36145	1
AGGGCGA	1140	71.31511	5
CGTAGGG	695	71.20737	2
AGGGATG	3170	71.15775	5
TAGAGGG	4220	71.0338	2
TAGCGGG	1255	70.98041	2
AGTAGGG	4020	70.69874	2
AAGGGTA	1635	70.33411	4
AATGCGG	620	69.98555	1
TAGGGCG	535	69.59326	4
AGGGCAT	2385	69.35768	5
GTAAAGG	2370	69.25373	1
ACGGGTA	225	69.12343	4
TAGGGCA	1345	69.02999	4
GGTAAGG	1515	68.80055	1
ACGGGAT	555	68.78377	4
GTAAGGG	3910	68.70976	2