SRR3126800.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126800.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2591589
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14904	0.5750911892279216	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	5333	0.20578108642998563	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	5171	0.1995300952427256	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTG	3560	0.13736746065830654	Illumina PCR Primer Index 7 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	3257	0.1256757919562091	TruSeq Adapter, Index 23 (96% over 25bp)
CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTG	3043	0.11741830977056933	Illumina PCR Primer Index 7 (95% over 22bp)
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2819	0.10877496393139499	No Hit

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5300	82.14172	1
CGTAGGG	685	77.52771	2
GGTAAGG	1505	73.8029	1
AGGGCAT	2485	73.568565	5
GTAGGGC	1430	72.9602	3
CGAAGGG	2620	72.82723	2
TAGGGCA	1475	72.646034	4
AGTAGGG	4320	71.47443	2
TAGGGCG	540	71.36564	4
AGGGTAC	995	71.32191	5
AGGGATG	3270	71.28579	5
TAGCGGG	1255	70.40171	2
TGTAGGG	2065	70.32463	2
AGAGGGC	3490	69.88935	3
GAATAGG	1560	69.08899	1
AGTAAGG	1610	68.98967	1
AAGGGAC	2570	68.940956	4
GGGCGAT	1195	68.82389	6
ATAGGGC	1715	68.508575	3
TAAGAGG	1965	68.50172	1