Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126767.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2118757 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19762 | 0.9327166824699575 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 4414 | 0.2083296951939274 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 3835 | 0.18100235185063696 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 2650 | 0.12507333309105292 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7685 | 0.0 | 86.64348 | 1 |
AGGGATG | 4490 | 0.0 | 75.990585 | 5 |
ACGGGAT | 750 | 0.0 | 74.56847 | 4 |
ATAGCGG | 470 | 0.0 | 74.08959 | 1 |
CGTAGGG | 640 | 0.0 | 73.43271 | 2 |
TAGGGCG | 475 | 0.0 | 73.21627 | 4 |
CGAGGGA | 1395 | 0.0 | 72.09565 | 3 |
CTACGAC | 970 | 0.0 | 71.70666 | 5 |
TACGACC | 975 | 0.0 | 71.33893 | 6 |
TAACGGG | 700 | 0.0 | 71.16678 | 2 |
GAGGGAT | 3875 | 0.0 | 71.07149 | 4 |
GTAGGGC | 900 | 0.0 | 71.017586 | 3 |
AAGGGAT | 5065 | 0.0 | 70.98254 | 4 |
CGAAGGG | 2115 | 0.0 | 70.217636 | 2 |
TAGGGCA | 1095 | 0.0 | 69.9589 | 4 |
AGGGATT | 3315 | 0.0 | 69.75111 | 5 |
AGAGGGA | 5730 | 0.0 | 69.63419 | 3 |
TAGCGGG | 1115 | 0.0 | 69.54703 | 2 |
GGTAAGG | 1260 | 0.0 | 69.46495 | 1 |
TAAGGGA | 2155 | 0.0 | 69.13238 | 3 |