SRR3126753.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126753.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1258818
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5973	0.4744927384260473	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4293	0.34103420828110176	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2587	0.20551024850296074	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2385	0.18946344904505655	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	1733	0.1376688290126134	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	1663	0.1321080569232407	Illumina PCR Primer Index 7 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	1415	0.11240703580660588	RNA PCR Primer, Index 16 (95% over 24bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1391	0.1105004853759638	No Hit
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	1361	0.1081172973376612	RNA PCR Primer, Index 16 (96% over 25bp)
GGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAGTATTTGCA	1312	0.1042247568751003	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	2770	82.5596	1
ATAGCGG	310	81.96778	1
ACGGGTA	155	81.86686	4
TAGGGCG	340	80.17244	4
CGTAGGG	355	76.815384	2
AGGGATG	2145	76.68612	5
GTACGGG	325	76.67276	2
ACGGGAT	390	75.91926	4
AGGGCAT	1190	75.43318	5
AAGGGAC	950	75.19622	4
CGAAGGG	1085	74.9661	2
TAGCGGG	785	74.26781	2
AGGGCGA	755	74.075745	5
AGAGGGC	1515	73.21084	3
AGGGTAC	470	72.99633	5
ATTGCGG	130	72.393196	1
GAGGGTA	610	71.65213	4
GGTAAGG	730	71.55026	1
GTAGGGC	580	71.306755	3
TAGAGGG	2260	71.14858	2