SRR3126752.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126752.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1318036
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6071	0.4606095736383528	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4419	0.3352715707309967	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2607	0.19779429393430834	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2422	0.18375825849976782	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	1795	0.13618747894594685	Illumina PCR Primer Index 7 (95% over 21bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	1777	0.13482181063339696	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	1587	0.12040642288981485	RNA PCR Primer, Index 16 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	1446	0.10970868777484075	RNA PCR Primer, Index 16 (96% over 25bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1423	0.10796366715324923	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	2685	82.883095	1
CGTAGGG	410	82.52523	2
CGAAGGG	1250	80.45293	2
ATAGCGG	325	78.17349	1
TAGGGCG	200	77.53933	4
AGGGATG	2095	76.49067	5
AGGGCAT	1265	75.784035	5
TAGCGGG	745	75.06349	2
CAGGGTA	350	73.84698	4
GCGTAGG	255	73.80213	1
GGGCGAT	580	73.73123	6
CGAGGGA	645	72.85819	3
AAGGGTA	855	72.551414	4
ATAGAGG	890	72.42353	1
AGTAAGG	970	72.270935	1
ACTAGGG	595	71.87246	2
AGAGGGC	1400	71.83297	3
AAGGGAC	1250	71.806114	4
AGAAGGG	4110	71.80521	2
AGGGTAC	480	71.46933	5