SRR3126721.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126721.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1952980
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14734	0.754436809388729	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4461	0.22842015791252343	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	3192	0.16344253397372221	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3145	0.16103595530932216	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2619	0.13410275578858974	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	2489	0.12744626161046196	No Hit
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	2374	0.12155782445288739	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	2350	0.12032893322000224	TruSeq Adapter, Index 16 (95% over 21bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2117	0.10839844750074246	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	315	88.37322	1
CGTTTTT	6095	86.15901	1
AGGGCAT	1785	78.189476	5
TAAGGGA	1485	76.84427	3
CGTAGGG	605	76.3824	2
TAGGGCA	1245	74.99259	4
AGGGATG	2620	74.79366	5
ACGGGAT	560	74.09983	4
GAATAGG	1125	73.81411	1
AAGGGTA	1215	73.739456	4
AAGGGAC	1825	73.638435	4
ATAGGGC	1290	73.4732	3
AGTAGGG	3180	73.10421	2
AGTAAGG	1385	72.90264	1
GGTAAGG	1240	72.67599	1
GTACGGG	390	72.54529	2
CGAAGGG	1725	72.440155	2
TAACGGG	630	71.85438	2
CGAGGGA	1070	71.8334	3
TAGCGGG	965	71.83111	2