SRR3126720.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126720.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1952196
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

$Per Sequence quality graph$

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

$Duplication level graph$

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14095	0.7220074213859674	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4158	0.2129909086997412	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	3309	0.16950142301285323	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3035	0.15546594706679043	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	2514	0.12877805302336445	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	2383	0.12206766123893298	No Hit
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG	2284	0.11699644912703437	No Hit
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	2169	0.11110564717886934	TruSeq Adapter, Index 16 (95% over 21bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2116	0.10839075584623675	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5765	85.79914	1
CGTAGGG	520	80.47994	2
ATAGCGG	375	79.065834	1
AGTACGG	275	78.72355	1
AGGGCAT	1775	75.72426	5
AGGGCGA	915	74.98926	5
GGTAAGG	1240	74.38989	1
AGTAGGG	3300	74.09526	2
CGAAGGG	1925	72.54822	2
ATAGGGC	1190	72.27223	3
TAAGGGA	1660	71.91061	3
GAGGGTA	1000	71.904945	4
AGGGTAA	845	71.74644	5
AGGGATG	2690	71.63065	5
TAGCGGG	955	71.39464	2
GGGCGAT	875	70.36076	6
GTACGGG	540	69.66221	2
AGAGGGC	2430	69.62474	3
AGTAAGG	1225	69.53797	1
AGGGTAC	775	69.13063	5