Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126713.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2214717 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26007 | 1.1742809577928015 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 3202 | 0.1445782914927731 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2984 | 0.13473504741237818 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 2961 | 0.13369654000940076 | No Hit |
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC | 2382 | 0.1075532449518381 | No Hit |
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG | 2234 | 0.10087067557615714 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 9305 | 0.0 | 87.177536 | 1 |
AGGGATG | 4200 | 0.0 | 74.858406 | 5 |
AGGGCAT | 2005 | 0.0 | 74.53779 | 5 |
CGTAGGG | 635 | 0.0 | 74.00826 | 2 |
ATAGGGC | 1350 | 0.0 | 72.40749 | 3 |
TAGCGGG | 1070 | 0.0 | 72.0301 | 2 |
AGTAGGG | 3480 | 0.0 | 71.57322 | 2 |
ATAGCGG | 525 | 0.0 | 70.80297 | 1 |
GGTAAGG | 1355 | 0.0 | 70.4921 | 1 |
TAAGGGA | 2180 | 0.0 | 70.061714 | 3 |
GAGGGAT | 2935 | 0.0 | 69.33357 | 4 |
CGAAGGG | 2075 | 0.0 | 68.62439 | 2 |
GAATAGG | 1610 | 0.0 | 68.09477 | 1 |
TAGGGCA | 1275 | 0.0 | 67.82212 | 4 |
AAGGGAT | 4205 | 0.0 | 67.393036 | 4 |
GGATGGC | 2950 | 0.0 | 67.22862 | 7 |
TAGAGGG | 3885 | 0.0 | 66.77317 | 2 |
GAAGGGC | 2980 | 0.0 | 65.7618 | 3 |
AAGGGAC | 2295 | 0.0 | 65.7334 | 4 |
TGAAGGG | 3790 | 0.0 | 65.71895 | 2 |