SRR3126709.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126709.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1488774
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8349	0.5607970047838019	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4935	0.33148080232459726	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4464	0.2998440327410339	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	3530	0.23710784847129246	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	3197	0.21474045086762664	No Hit
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	3194	0.21453894278110713	No Hit
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	2905	0.1951269971130608	Illumina Single End Adapter 1 (95% over 21bp)
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2291	0.15388500873873404	No Hit
AAAGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTT	1815	0.12191239234430479	No Hit
GGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAGTATTTGCA	1682	0.11297886717527307	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTAGGG	425	92.10361	2
CGTTTTT	3635	85.448494	1
CGCTACG	1080	84.71601	3
GCTACGA	1080	84.71601	4
TAGGGCG	275	84.03319	4
AGGGATG	2820	82.65261	5
TCCGCTA	1130	81.87674	1
GCGTAGG	220	81.53495	1
ACGGGAT	545	81.34274	4
CGAGGGA	755	80.58055	3
CTACGAC	1140	79.96886	5
TAGCGGG	740	79.66467	2
AGGGCAT	1325	79.08843	5
AGGGTAC	595	78.978165	5
GGTAAGG	890	78.497284	1
CGAAGGG	1350	78.253136	2
TCGAGGG	440	78.24519	2
ATAGCGG	300	77.1006	1
AGGGAAC	1310	76.765564	5
GTAGGGT	530	76.526184	3