Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126696.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2305420 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25361 | 1.100059858941104 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 5233 | 0.22698683970816597 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 3420 | 0.14834607143166972 | No Hit |
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC | 2490 | 0.10800635025288235 | TruSeq Adapter, Index 15 (95% over 21bp) |
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT | 2468 | 0.10705207727876048 | No Hit |
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG | 2466 | 0.10696532519020396 | No Hit |
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG | 2368 | 0.10271447285093388 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 9425 | 0.0 | 87.50071 | 1 |
CGTAGGG | 580 | 0.0 | 74.57735 | 2 |
TAAGGGA | 1785 | 0.0 | 73.71884 | 3 |
ATAGGGC | 1475 | 0.0 | 73.600136 | 3 |
AGGGTAC | 895 | 0.0 | 73.51292 | 5 |
AGTAAGG | 1420 | 0.0 | 72.88621 | 1 |
GGGCGAT | 1065 | 0.0 | 72.36906 | 6 |
TAGCGGG | 1185 | 0.0 | 71.41695 | 2 |
AGTAGGG | 3580 | 0.0 | 70.78689 | 2 |
TAGGGTC | 555 | 0.0 | 70.28195 | 4 |
GTAGGGC | 1185 | 0.0 | 70.196205 | 3 |
AGGGATG | 2585 | 0.0 | 70.17549 | 5 |
AGGGCAT | 2010 | 0.0 | 69.6753 | 5 |
ATAGCGG | 560 | 0.0 | 68.88693 | 1 |
AAGGGTA | 1440 | 0.0 | 68.86184 | 4 |
CGAGGGA | 1290 | 0.0 | 68.85425 | 3 |
GGTAAGG | 1360 | 0.0 | 68.4916 | 1 |
CGAAGGG | 2405 | 0.0 | 68.422676 | 2 |
TAGGGCA | 1135 | 0.0 | 68.31983 | 4 |
ACGGGAT | 540 | 0.0 | 67.88277 | 4 |