Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126683.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2933696 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31984 | 1.090228844433779 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 5722 | 0.1950440672789546 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 4153 | 0.14156204323829052 | No Hit |
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG | 3216 | 0.10962281027073018 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 12215 | 0.0 | 86.26301 | 1 |
AGGGATG | 3805 | 0.0 | 73.48968 | 5 |
GGTAAGG | 1805 | 0.0 | 72.742966 | 1 |
TAGGGCA | 1400 | 0.0 | 71.83726 | 4 |
ATAGGGC | 2045 | 0.0 | 71.70101 | 3 |
AGTAGGG | 4720 | 0.0 | 70.99235 | 2 |
ACGGGAT | 805 | 0.0 | 70.05665 | 4 |
GAATAGG | 2040 | 0.0 | 69.2078 | 1 |
ATAGGGA | 2665 | 0.0 | 68.246086 | 3 |
CGAAGGG | 2780 | 0.0 | 67.78968 | 2 |
TAAGAGG | 2145 | 0.0 | 67.5752 | 1 |
ATAGCGG | 620 | 0.0 | 67.55575 | 1 |
AAGGGTA | 1830 | 0.0 | 67.54118 | 4 |
AGGGCAT | 2495 | 0.0 | 66.68017 | 5 |
TAGGGCG | 665 | 0.0 | 66.430916 | 4 |
TAAGGGA | 2455 | 0.0 | 66.23516 | 3 |
ATAGAGG | 1890 | 0.0 | 66.234436 | 1 |
AATAGGG | 4685 | 0.0 | 66.206154 | 2 |
GTAGGGC | 1295 | 0.0 | 66.048904 | 3 |
AGTAAGG | 1810 | 0.0 | 66.04183 | 1 |