SRR3126676.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126676.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1010834
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6007	0.5942617680054292	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	4711	0.46605080557242834	No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	3227	0.319241339329702	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	2866	0.28352825488655903	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	2835	0.28046148032218937	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2204	0.21803777870550456	No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGG	2193	0.21694956837621213	No Hit
GGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCATTGGTAT	1804	0.17846649400396108	No Hit
GCAGAGAATATCAACTGTCTCTTATACACATCTGACGCCCTATCGTTCGT	1317	0.1302884548798319	No Hit
GGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGGGAGTATTTGCA	1250	0.12366026469232339	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT	1057	0.10456711982382864	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTACGG	120	0.0	94.30075	1
CGTTTTT	2855	0.0	86.538704	1
TAACGGG	275	0.0	83.98006	2
CGAAGGG	750	0.0	82.32331	2
GGTAAGG	505	0.0	82.16304	1
GACCGAT	105	0.0	80.56133	8
CTATAGG	65	0.0	79.792946	1
CGAGGGC	260	0.0	79.74941	3
AGGGCAT	715	0.0	79.5285	5
AGGGTAC	320	0.0	79.30256	5
TAGGGCG	125	0.0	79.16941	4
CGTAGGG	370	0.0	78.97739	2
TAGCGGG	490	0.0	78.8734	2
GATTAGG	300	0.0	78.58397	1
AGAGGGC	890	0.0	78.36459	3
GGGTACG	30	1.4570978E-6	78.323524	6
CGGGTAT	85	0.0	77.40207	5
ACGAGGG	940	0.0	77.21571	2
GCAAGGG	1350	0.0	76.45804	2
GTAAAGG	685	0.0	75.715935	1