SRR3126596.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126596.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1932087
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16593	0.8588122584542	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4370	0.22618029105314616	No Hit
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	3858	0.19968044917231986	RNA PCR Primer, Index 27 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	3270	0.16924703701230845	RNA PCR Primer, Index 38 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	3017	0.15615238858291577	RNA PCR Primer, Index 38 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2225	0.11516044567351263	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCGACTATG	2168	0.11221026796412377	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6005	83.99504	1
ACGGGAT	665	76.32716	4
AGGGATG	2690	73.5541	5
TAGGGCA	920	73.05085	4
ATAACGG	155	72.85367	1
TAAGGGA	1615	72.75193	3
TAGCGGG	970	72.69386	2
TAGACGG	280	72.257385	1
CGTAGGG	625	72.20536	2
AAGGGAC	1895	70.68263	4
ATGCGGG	1060	70.069565	2
AGTAGGG	3090	69.82845	2
TTGACGG	135	69.70567	1
CGGGTAT	135	69.62629	5
AGGGAAT	2565	69.25984	5
ATAGGGA	1945	69.10723	3
ATAGCGG	375	69.00861	1
AGAGGGC	2585	68.72398	3
GAATAGG	1130	68.70326	1
AGGGCAT	1590	68.27975	5