SRR3126595.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126595.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1980081
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16565	0.8365819378096149	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4319	0.21812238994263367	No Hit
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	4179	0.21105197211629223	RNA PCR Primer, Index 27 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTG	3674	0.18554796495698914	RNA PCR Primer, Index 38 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	3212	0.16221558613006237	RNA PCR Primer, Index 38 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2232	0.11272266134567223	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCGACTATG	2012	0.10161200476142138	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5855	85.07742	1
ATAGCGG	435	76.77403	1
AGGGATG	3070	75.30661	5
ATGCGGG	965	72.554665	2
GTACGGG	425	71.86722	2
TAGCGGG	1110	71.54349	2
AGGGCAT	1720	71.30475	5
TAGGGCA	920	70.48515	4
ATAGGGA	1685	70.276	3
ATAGAGG	1200	70.16444	1
AGTAGGG	3110	69.80523	2
ACGGGAT	615	69.53007	4
ACGGGTA	245	69.046684	4
GGTAAGG	990	68.41834	1
AGAGGGC	2625	68.023766	3
TAAGCGG	505	67.994965	1
CGTAGGG	540	67.874596	2
AAGAGGG	5975	67.87022	2
TAAGGGA	1835	67.86036	3
AGGGAAT	2575	67.70224	5