Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126555.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2831458 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25552 | 0.9024325983292 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 6755 | 0.23856966976024369 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 8590 | 0.0 | 84.31887 | 1 |
ATAGGGC | 1685 | 0.0 | 76.70626 | 3 |
CGTAGGG | 690 | 0.0 | 73.56525 | 2 |
TAGGGCA | 1490 | 0.0 | 72.55036 | 4 |
ATTACGG | 340 | 0.0 | 71.93192 | 1 |
AGTAGGG | 4535 | 0.0 | 71.82142 | 2 |
GTAGGGC | 1280 | 0.0 | 70.86722 | 3 |
TAGAGGG | 5095 | 0.0 | 70.845955 | 2 |
ATAGGGA | 2610 | 0.0 | 69.86976 | 3 |
AGGGATG | 3965 | 0.0 | 69.46282 | 5 |
AGGGCAT | 2470 | 0.0 | 69.45347 | 5 |
ATAGAGG | 1910 | 0.0 | 69.194275 | 1 |
ATAGCGG | 585 | 0.0 | 67.533714 | 1 |
TATAGGG | 2900 | 0.0 | 67.09658 | 2 |
GTAGGGA | 2220 | 0.0 | 66.900925 | 3 |
CGAAGGG | 2820 | 0.0 | 66.666695 | 2 |
AGGGACT | 4830 | 0.0 | 66.656334 | 5 |
AGAGGGC | 4735 | 0.0 | 66.40552 | 3 |
AATAGGG | 4220 | 0.0 | 66.04505 | 2 |
ATAAGGG | 3845 | 0.0 | 66.00783 | 2 |