SRR3126484.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126484.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1725957
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14809	0.8580167408573911	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4466	0.2587549979518609	No Hit
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG	4243	0.2458346297155723	No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	3602	0.20869581339511933	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG	3558	0.20614650307047044	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2595	0.15035137028326895	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCATGTGCTT	2426	0.14055970108177665	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	1909	0.11060530476715237	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGGGAT	510	82.930664	4
CGTTTTT	5045	81.870865	1
GAATAGG	850	76.37587	1
AGGGTAC	865	74.97316	5
AGGGATG	3200	74.7499	5
GTACGGG	445	73.92322	2
AGGGAAT	2335	73.86217	5
TACGGGT	135	73.10185	3
CGTAGGG	455	72.29854	2
GAGGGTA	1085	71.89873	4
GTAGGGA	1350	71.70943	3
TAGGGCA	860	71.583954	4
TAGGGTA	660	70.49107	4
ATAGGGC	1025	70.14721	3
AGTAGGG	2730	70.06072	2
AGGGTAT	1050	69.819725	5
GAGGGAT	2420	69.32593	4
AAGGGTA	1035	69.01541	4
GTAGGGT	840	68.81271	3
TAGGGCG	240	68.53298	4