SRR3126473.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126473.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1126534
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8069	0.7162677735425651	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	6166	0.5473425569046296	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTCAATCC	2518	0.22351744377000607	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	2431	0.21579464090742045	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	2094	0.1858798757960257	TruSeq Adapter, Index 22 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	2029	0.1801099656113353	No Hit
AAAGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	1206	0.10705402588825548	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1175	0.10430222256940314	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCGTC	1175	0.10430222256940314	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	3355	85.95531	1
CGTAGGG	325	82.460396	2
AGGGATG	3340	82.31339	5
CGGGTCA	75	81.459785	5
CGGGATG	775	81.257645	5
TAGGGCG	140	80.56462	4
CGGGAAT	315	80.56462	5
GGATGGC	2610	80.30739	7
GATGGCA	2370	79.11989	8
GCGGGAT	850	78.51101	4
CGAGGGA	940	78.49336	3
TCCGCTA	1020	78.40676	1
AGGGATC	1405	77.93647	5
AAGGGAT	3425	77.663506	4
TACGACC	1035	77.645615	6
CGCTACG	1030	77.56626	3
GCGTAGG	195	77.20049	1
AGTAAGG	775	77.09154	1
AGGGAAT	2135	76.82255	5
TAGCGGG	545	76.779884	2