SRR3126471.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126471.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1289600
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10442	0.8097084367245658	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	7289	0.5652140198511166	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	2887	0.22386786600496278	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTG	2574	0.1995967741935484	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	2367	0.1835452853598015	TruSeq Adapter, Index 22 (95% over 21bp)
AAAGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTT	1430	0.11088709677419355	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	1345	0.10429590570719602	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCGTC	1315	0.1019696029776675	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTAGGG	335	89.79086	2
CGTTTTT	4010	86.55228	1
CTAGCGG	130	83.2053	1
AGGGATG	3855	82.53939	5
TCCGCTA	1225	81.77301	1
GCGGGAT	880	81.181656	4
CGCTACG	1255	80.143265	3
AGCGGGA	1085	79.27172	3
GCTACGA	1280	78.94515	4
GGATGGC	2940	78.8036	7
CGAGGGA	1020	78.33317	3
TAAGGGA	1710	78.05832	3
GTAGGGC	765	78.025986	3
CGAAGGG	1115	77.9819	2
AAGGGCG	755	77.814415	4
CGGGATG	800	77.549835	5
GATGGCA	2710	77.51481	8
AAGGGAT	3845	76.642235	4
CTACGAC	1320	76.55287	5
GGGCGAT	455	76.43051	6