SRR3126448.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126448.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2589756
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38753	1.4963957994498325	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3371	0.13016670296352242	No Hit
CGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCT	3049	0.11773309917999997	TruSeq Adapter, Index 10 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	2958	0.11421925463248275	TruSeq Adapter, Index 10 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG	2841	0.1097014544999606	RNA PCR Primer, Index 10 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTT	2683	0.1036004936372384	No Hit
GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG	2652	0.10240346967050178	Illumina PCR Primer Index 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	13125	86.33154	1
CGTAGGG	635	71.78534	2
ACGGGAT	555	71.1294	4
ATAGGGC	1495	70.730095	3
GTAGGGA	1555	70.41877	3
AGTAGGG	3985	69.812164	2
TAGGGCA	1185	69.800285	4
ATAGGGA	1970	67.98945	3
AGGGATG	3235	67.69779	5
TAGGGAT	1380	66.74825	4
ATGCGGG	1190	66.34376	2
AGAGGGC	4185	66.142815	3
TAGAGGG	4725	66.13899	2
GTAGGGC	1180	66.11332	3
TACGGGT	185	66.04874	3
TGTAGGG	1835	65.8165	2
ATAGAGG	1790	65.43021	1
AGGGAAT	2835	65.313965	5
CGAAGGG	2465	65.1999	2
GTACGGG	665	65.01356	2