SRR3126428.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126428.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2058355
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15380	0.747198612484241	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3279	0.1593019668618873	No Hit
GCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	3168	0.15390931107607775	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3029	0.1471563457226766	No Hit
CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	2764	0.1342819873151133	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	2505	0.12169912381489102	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTT	2484	0.12067889163919733	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCTAATGAC	2478	0.12038739673185625	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5885	81.31862	1
ACGGGAT	585	77.92411	4
ATAGCGG	510	74.73608	1
TAGCGGG	1280	73.83165	2
AGGGATG	3245	73.715546	5
TAGGGCA	935	73.3833	4
AGGGCAT	1805	70.5583	5
TAAGGGA	1850	69.85813	3
ATAGGGA	1890	68.87696	3
AGGGAAT	2415	68.49857	5
AGAGGGC	2855	68.47676	3
AGGGCTC	1670	68.10122	5
AGTAGGG	3285	67.699	2
ATAGAGG	1240	67.5482	1
GAATAGG	1155	67.22293	1
TGAAGGG	3515	67.01452	2
GGATGGC	2700	67.01206	7
ATGAGGG	3165	66.551956	2
AGGGACT	2975	65.87264	5
GTAGGGC	825	65.508835	3