SRR3126427.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3126427.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2082848
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15307	0.7349072039822397	No Hit
GCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	3331	0.1599252561876815	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3206	0.15392385810198342	No Hit
CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	3123	0.14993892977307993	TruSeq Adapter, Index 14 (95% over 21bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3010	0.1445136659036089	No Hit
CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	2746	0.13183871314661463	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTT	2715	0.13035036642136152	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCTAATGAC	2302	0.11052174714621518	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5760	82.99145	1
ACGGGAT	535	75.543236	4
AGGGATG	3335	75.24824	5
ATAGCGG	495	75.09033	1
TAGGGCA	1085	72.76633	4
TAGCGGG	1285	72.04496	2
CGTAGGG	585	71.494835	2
TAAGGGA	1665	71.12745	3
AGGGCAT	1625	70.56468	5
AGTAGGG	3220	70.19881	2
AGGGAAT	2485	69.97231	5
AGAGGGC	2895	69.153145	3
ACGGGTA	280	68.813995	4
AAGGGAT	3650	68.239204	4
TGTAGGG	1585	68.192894	2
GGATGGC	2550	68.19035	7
ATAGGGA	2060	67.98294	3
ATAAGGG	2705	67.928185	2
GTAGGGA	1745	67.86659	3
AAGGGAC	1745	67.86659	4