Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126387.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2223663 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19811 | 0.8909173737207482 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 2981 | 0.13405808344160064 | No Hit |
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG | 2575 | 0.1157999211211411 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2568 | 0.11548512521906422 | No Hit |
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC | 2497 | 0.1122921953551415 | TruSeq Adapter, Index 15 (95% over 21bp) |
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG | 2330 | 0.10478206454845002 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 6775 | 0.0 | 85.54756 | 1 |
AGGGATG | 4615 | 0.0 | 75.157234 | 5 |
TAGGGCA | 1405 | 0.0 | 73.926834 | 4 |
ATAGCGG | 540 | 0.0 | 73.17989 | 1 |
AAGGGAT | 4290 | 0.0 | 70.66242 | 4 |
GAATAGG | 1180 | 0.0 | 70.16764 | 1 |
ACGGGAT | 710 | 0.0 | 70.167114 | 4 |
TAAGGGA | 2255 | 0.0 | 70.029144 | 3 |
AGGGAAT | 2605 | 0.0 | 69.64111 | 5 |
AGTAGGG | 3935 | 0.0 | 69.393295 | 2 |
ATAGAGG | 1755 | 0.0 | 68.89096 | 1 |
TAAACGG | 240 | 0.0 | 68.60615 | 1 |
AGTAAGG | 1510 | 0.0 | 68.22969 | 1 |
TAGAGGG | 4425 | 0.0 | 67.97556 | 2 |
CGTAGGG | 695 | 0.0 | 67.62407 | 2 |
AGAGGGC | 3470 | 0.0 | 67.31518 | 3 |
GGATGGC | 4155 | 0.0 | 67.30112 | 7 |
GTACGGG | 555 | 0.0 | 66.899086 | 2 |
CGAAGGG | 2250 | 0.0 | 66.21599 | 2 |
TAGCGGG | 1300 | 0.0 | 66.15975 | 2 |