Basic Statistics
Measure | Value |
---|---|
Filename | SRR3126370.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1478757 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12123 | 0.8198101513636114 | No Hit |
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG | 3782 | 0.25575534046499865 | No Hit |
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC | 3525 | 0.2383758792012481 | No Hit |
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGGTATTCA | 3496 | 0.23641477267732294 | No Hit |
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG | 3431 | 0.2320191890892148 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 2476 | 0.1674379225254724 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT | 1643 | 0.1111068282347945 | No Hit |
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA | 1591 | 0.107590361364308 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 4610 | 0.0 | 84.68834 | 1 |
CGTAGGG | 345 | 0.0 | 83.086624 | 2 |
TAGGGCA | 855 | 0.0 | 80.245705 | 4 |
ATAGGGC | 825 | 0.0 | 79.74604 | 3 |
GTAGGGC | 790 | 0.0 | 79.11514 | 3 |
AGTACGG | 230 | 0.0 | 73.62428 | 1 |
CGAAGGG | 1450 | 0.0 | 72.59394 | 2 |
AGTAGGG | 2245 | 0.0 | 71.795654 | 2 |
GTAGGGT | 585 | 0.0 | 71.493935 | 3 |
TAGGGCG | 225 | 0.0 | 71.011955 | 4 |
TAGGGAC | 695 | 0.0 | 70.32076 | 4 |
AAGGGAC | 1090 | 0.0 | 70.27425 | 4 |
ATAGGGA | 965 | 0.0 | 70.12457 | 3 |
ACGGGAT | 350 | 0.0 | 69.818474 | 4 |
AATAGGG | 1850 | 0.0 | 69.59839 | 2 |
GCGTAGG | 210 | 0.0 | 69.43666 | 1 |
AGGGATG | 1410 | 0.0 | 68.99002 | 5 |
GGTAAGG | 805 | 0.0 | 68.94973 | 1 |
GTAGGGA | 1065 | 0.0 | 68.83511 | 3 |
GAATAGG | 745 | 0.0 | 68.82031 | 1 |