SRR3554444_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554444_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	359891
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3389	0.9416740068520746	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	1465	0.40706769549669203	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	1374	0.38178226185150504	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	1219	0.33871366608223047	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	973	0.27035963666776885	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	578	0.1606041829331659	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACGATT	485	0.13476302547160113	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	446	0.12392641105223527	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	391	0.10864400610184752	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	371	0.10308676793807015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGA	25	3.885446E-5	45.000004	23
AGGGCGC	25	3.885446E-5	45.000004	6
AGTACGG	50	2.1827873E-11	45.000004	2
CGACGTT	20	7.026821E-4	45.0	27
GCACGGT	20	7.026821E-4	45.0	21
CCTACCG	20	7.026821E-4	45.0	14
GCGTTAG	20	7.026821E-4	45.0	1
GTAAGCG	20	7.026821E-4	45.0	1
CTCTCTA	20	7.026821E-4	45.0	39
TCGACGT	20	7.026821E-4	45.0	26
ATCGAGG	20	7.026821E-4	45.0	2
AATCGCG	20	7.026821E-4	45.0	1
CACGTGA	30	2.1613305E-6	44.999996	43
AACACGT	30	2.1613305E-6	44.999996	41
CGTTTTT	1665	0.0	42.7027	1
AAGGGCG	75	0.0	42.0	5
GTACGGG	120	0.0	41.249996	3
CACTAGG	55	6.002665E-11	40.90909	2
TGCACGG	105	0.0	40.714283	2
TAATACG	50	1.0768417E-9	40.500004	4