SRR3554441_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554441_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	289880
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4569	1.5761694494273493	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTC	2315	0.7986063198564923	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCG	2278	0.7858424175520904	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGC	2134	0.7361666896646888	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	1378	0.47536911825583	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	763	0.26321236373671864	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTTCGGAT	760	0.26217745273906445	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCT	560	0.19318338622878434	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	557	0.1921484752311301	Illumina Single End Adapter 1 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	451	0.15558161998068168	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	445	0.15351179798537326	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTC	412	0.14212777701117704	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTA	410	0.14143783634607424	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	403	0.13902304401821444	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	343	0.1183248240651304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCC	20	7.0245506E-4	45.0	34
TACCACG	20	7.0245506E-4	45.0	1
TAGACGG	20	7.0245506E-4	45.0	2
GCGAACC	20	7.0245506E-4	45.0	33
CGCATGG	25	3.883565E-5	45.0	2
GGCGTAG	20	7.0245506E-4	45.0	1
TAACGTA	25	3.883565E-5	45.0	32
TCTAGCG	20	7.0245506E-4	45.0	1
ATTCCGC	20	7.0245506E-4	45.0	44
ACGATAG	20	7.0245506E-4	45.0	18
AGTGATT	35	1.207718E-7	45.0	42
CGTAGAA	20	7.0245506E-4	45.0	35
CTCATGT	25	3.883565E-5	45.0	15
GCGATTT	20	7.0245506E-4	45.0	9
ACGTAGA	20	7.0245506E-4	45.0	34
ATACGCA	20	7.0245506E-4	45.0	41
CGATCGA	45	3.8198777E-10	45.0	41
GCATGAC	20	7.0245506E-4	45.0	22
GTTGGTC	20	7.0245506E-4	45.0	11
GACCTTA	20	7.0245506E-4	45.0	9