SRR3554440_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554440_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	469514
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4763	1.0144532431407796	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC	2083	0.4436502425912752	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC	2064	0.43960350490081235	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG	1908	0.40637765860016956	No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1597	0.34013895219311885	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	859	0.18295514084777023	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	718	0.15292408746065078	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGGTACAT	654	0.13929297102961785	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	590	0.12566185459858492	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	489	0.10415024898086107	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCC	485	0.10329830420392151	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCA	20	7.02902E-4	45.0	44
GCGCGAC	25	3.8872684E-5	45.0	9
CAACCGG	20	7.02902E-4	45.0	1
CGACCCG	20	7.02902E-4	45.0	32
CGACAAT	25	3.8872684E-5	45.0	20
AACGGCA	20	7.02902E-4	45.0	20
GCCGATC	20	7.02902E-4	45.0	43
GTATGCG	25	3.8872684E-5	45.0	1
TACGAAT	50	2.1827873E-11	45.0	12
TCATCGA	20	7.02902E-4	45.0	16
TTCGGAC	25	3.8872684E-5	45.0	14
ACGTAAG	35	1.2098826E-7	45.0	1
CGCACGG	35	1.2098826E-7	45.0	2
CAATACA	20	7.02902E-4	45.0	1
TTACGGG	115	0.0	43.04348	3
CGTTTTT	2500	0.0	42.390003	1
GTATTAG	60	3.6379788E-12	41.249996	1
CGAATAT	50	1.0786607E-9	40.5	14
CGTTATT	245	0.0	40.408165	1
CCTCGTC	45	1.924127E-8	40.0	36