SRR3554436_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554436_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	356063
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5099	1.432049946217383	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	2990	0.839739034946063	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTC	2990	0.839739034946063	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	2951	0.8287859170989403	No Hit
GCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	1214	0.3409508991386356	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGATCAGT	856	0.24040689428556183	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCT	767	0.215411317660077	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCT	646	0.18142856741644034	No Hit
CTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGCT	525	0.1474458171728037	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTC	493	0.13845864355465184	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTA	483	0.1356501517989794	No Hit
CCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	460	0.12919062076093274	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCC	453	0.12722467653196204	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTG	433	0.12160769302061714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	20	7.02672E-4	45.000004	9
CGTGAAC	20	7.02672E-4	45.000004	42
GGCCGGT	20	7.02672E-4	45.000004	9
CACGCGT	20	7.02672E-4	45.000004	41
CCTCGTC	40	6.7921064E-9	45.000004	36
CCCACGC	20	7.02672E-4	45.000004	39
TATTGCG	20	7.02672E-4	45.000004	1
AGCGGAA	20	7.02672E-4	45.000004	4
CCGACTT	20	7.02672E-4	45.000004	44
ACCACTC	20	7.02672E-4	45.000004	23
ACCCGTG	40	6.7921064E-9	45.000004	39
ACCCGTC	20	7.02672E-4	45.000004	39
CAGTCGA	20	7.02672E-4	45.000004	41
GTAACGG	40	6.7921064E-9	45.000004	2
AGTAACG	20	7.02672E-4	45.000004	1
ACGAAAC	20	7.02672E-4	45.000004	36
CGGCGAA	50	2.1827873E-11	45.0	31
GTCGACG	25	3.8853646E-5	45.0	1
GATCGAG	25	3.8853646E-5	45.0	1
GCGAACA	25	3.8853646E-5	45.0	33