SRR3554433_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554433_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1407864
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7143	0.5073643476926749	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	3140	0.22303290658756814	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	2993	0.21259155713904185	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	2764	0.1963257814675281	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2488	0.1767216151560094	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	2385	0.16940556758323247	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTG	2151	0.15278464397129268	TruSeq Adapter, Index 27 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGCT	2144	0.15228743685469617	TruSeq Adapter, Index 27 (95% over 24bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	1987	0.1411357915253178	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAACGG	85	0.0	45.000004	2
TCGAACG	35	1.2121927E-7	45.000004	1
TCTACGG	80	0.0	45.0	2
TCGAACA	20	7.033829E-4	45.0	38
TAATACG	95	0.0	42.63158	4
CGTTTTT	3795	0.0	41.442688	1
CGTTATT	490	0.0	41.32653	1
ACGCGAG	60	3.6379788E-12	41.250004	1
ATTAGCG	55	6.184564E-11	40.90909	1
TACGGGT	100	0.0	40.5	4
ACGGGAT	835	0.0	40.1497	5
TATAGCG	45	1.9288564E-8	40.0	1
AGTACGG	180	0.0	40.0	2
CGGTCTA	295	0.0	39.66102	31
CGAATAT	390	0.0	39.23077	14
TCACGAC	305	0.0	39.098362	25
GCTACGA	395	0.0	38.734177	10
TACGAAC	35	6.249289E-6	38.57143	34
CTCACGT	235	0.0	38.29787	45
AGCTACG	395	0.0	38.164555	9