##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554426_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1018395 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.209033822829056 33.0 31.0 34.0 30.0 34.0 2 32.31276862121279 34.0 31.0 34.0 30.0 34.0 3 32.31495539549978 34.0 31.0 34.0 30.0 34.0 4 35.880412806425795 37.0 35.0 37.0 35.0 37.0 5 35.95327451529122 37.0 35.0 37.0 35.0 37.0 6 35.95184579657206 37.0 35.0 37.0 35.0 37.0 7 36.148393305151735 37.0 36.0 37.0 35.0 37.0 8 35.98861934710991 37.0 36.0 37.0 35.0 37.0 9 37.79514039248033 39.0 38.0 39.0 35.0 39.0 10 37.620584350865826 39.0 37.0 39.0 35.0 39.0 11 37.62724974101405 39.0 37.0 39.0 35.0 39.0 12 37.49082232336176 39.0 37.0 39.0 35.0 39.0 13 37.444571114351504 39.0 37.0 39.0 35.0 39.0 14 38.629497395411406 40.0 38.0 41.0 35.0 41.0 15 38.77607804437375 40.0 38.0 41.0 35.0 41.0 16 38.827787842634734 40.0 38.0 41.0 35.0 41.0 17 38.78823737351421 40.0 38.0 41.0 35.0 41.0 18 38.75571462939233 40.0 38.0 41.0 35.0 41.0 19 38.7328237078933 40.0 38.0 41.0 35.0 41.0 20 38.70511442023969 40.0 38.0 41.0 35.0 41.0 21 38.637910633889604 40.0 38.0 41.0 35.0 41.0 22 38.65256015593164 40.0 38.0 41.0 35.0 41.0 23 38.6347114822834 40.0 38.0 41.0 35.0 41.0 24 38.59814708438278 40.0 38.0 41.0 35.0 41.0 25 38.49807294811934 40.0 38.0 41.0 34.0 41.0 26 38.49235512743091 40.0 38.0 41.0 35.0 41.0 27 38.454732201159665 40.0 38.0 41.0 35.0 41.0 28 38.408327809936225 40.0 38.0 41.0 34.0 41.0 29 38.3938962779668 40.0 38.0 41.0 34.0 41.0 30 38.23980871862097 40.0 37.0 41.0 34.0 41.0 31 38.22270729923065 40.0 37.0 41.0 34.0 41.0 32 38.13048964301671 40.0 37.0 41.0 34.0 41.0 33 38.058734577447844 40.0 37.0 41.0 34.0 41.0 34 37.956706386029 40.0 37.0 41.0 34.0 41.0 35 37.89560730364937 40.0 37.0 41.0 33.0 41.0 36 37.85346353821454 40.0 37.0 41.0 33.0 41.0 37 37.839884327790294 40.0 37.0 41.0 33.0 41.0 38 37.73942919986842 40.0 37.0 41.0 33.0 41.0 39 37.67375428983842 40.0 36.0 41.0 33.0 41.0 40 37.606430707142124 40.0 36.0 41.0 33.0 41.0 41 37.513598358200895 40.0 36.0 41.0 33.0 41.0 42 37.50747892517147 40.0 36.0 41.0 33.0 41.0 43 37.46793434767453 40.0 36.0 41.0 33.0 41.0 44 37.44476553792978 40.0 36.0 41.0 33.0 41.0 45 37.38121063045282 40.0 35.0 41.0 33.0 41.0 46 37.28299431949293 40.0 35.0 41.0 33.0 41.0 47 37.253858276994684 40.0 35.0 41.0 33.0 41.0 48 37.187825941800575 39.0 35.0 41.0 32.0 41.0 49 37.12316733683885 39.0 35.0 41.0 32.0 41.0 50 37.053137535042886 39.0 35.0 41.0 32.0 41.0 51 36.25674713642545 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 12.0 9 26.0 10 19.0 11 30.0 12 27.0 13 43.0 14 39.0 15 59.0 16 74.0 17 115.0 18 194.0 19 347.0 20 516.0 21 889.0 22 1283.0 23 1984.0 24 3145.0 25 4543.0 26 6201.0 27 7252.0 28 7934.0 29 9119.0 30 10887.0 31 14044.0 32 18389.0 33 25525.0 34 48184.0 35 64011.0 36 64061.0 37 96528.0 38 184618.0 39 447629.0 40 668.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.325615306438074 21.380603793223653 25.30579981244998 11.987981087888294 2 32.51695069202029 24.558741941977328 25.971258696281897 16.95304866972049 3 32.18584144658998 24.211037956784942 26.96772863181771 16.63539196480737 4 29.080563042827194 25.801972711963433 26.549226969888895 18.568237275320477 5 26.138089837440287 29.92905503267396 24.95220420367343 18.980650926212324 6 27.382891707048834 34.26911954595221 23.64524570525189 14.702743041747063 7 82.09182095355928 5.428541970453508 7.956735844146917 4.522901231840297 8 83.280357817939 4.952106009947024 7.381222413699989 4.386313758413975 9 75.70235517652777 8.96341792722863 9.488950750936523 5.845276145307076 10 33.00968681110964 38.83777905429622 15.263821994412776 12.888712140181363 11 30.902253055052313 24.780168795015687 25.778504411353158 18.539073738578843 12 28.908527634169452 22.470946931200565 28.040593286494925 20.579932148135054 13 26.507789217346904 22.352525297158763 30.861208077415935 20.2784774080784 14 22.02053230819083 25.983434718355845 30.157060865381315 21.838972108072017 15 20.976242027896838 25.4422890921499 32.81428129556802 20.767187584385233 16 24.91410503782913 25.587615807226076 29.548652536589437 19.949626618355353 17 24.546173144997766 25.099789374456865 28.703008164808352 21.651029315737016 18 24.438356433407467 24.799905734022655 30.110909813971986 20.650828018597892 19 23.816593757824815 26.596065377383038 28.55944893680743 21.027891927984722 20 25.1741220253438 26.582711030592254 28.058268157247433 20.18489878681651 21 24.776928402044394 26.115407086641234 29.578601623142298 19.529062888172074 22 23.408304243441886 24.0146505039793 29.816426828489927 22.760618424088886 23 21.974774031687115 26.421182350659617 29.567014763426762 22.037028854226502 24 22.436284545780367 25.381507175506556 28.93170135360052 23.250506925112553 25 21.93765680310685 26.849306997775912 27.910781180190398 23.30225501892684 26 21.054698815292692 27.403217808414222 28.405579367534205 23.13650400875888 27 21.5390884676378 26.53695275408854 29.487968813672495 22.43598996460116 28 19.825313360729382 27.082713485435416 29.632215397758237 23.459757756076964 29 21.979585524280854 26.302858910344217 28.392028633290618 23.32552693208431 30 22.716725828386824 25.8356531601196 29.119644145935514 22.32797686555806 31 22.758261774655217 27.00278379214352 27.617574713151576 22.621379720049685 32 22.91193495647563 27.736880090731002 26.887504357346607 22.463680595446757 33 22.15741436279636 26.81444822490291 27.418339642280255 23.609797770020474 34 21.43598505491484 27.610210183671363 28.18631277647671 22.76749198493708 35 20.7625724792443 26.81091325075241 27.784896822941985 24.641617447061307 36 21.650636540831407 28.724708978343372 27.132203123542435 22.492451357282782 37 21.863324152219914 27.96164553046706 27.627295892065458 22.54773442524757 38 20.341517780429008 27.98913977385985 26.39653572533251 25.27280672037864 39 22.036439691868086 26.378959048306406 26.825151341080815 24.759449918744693 40 22.609891054060558 24.90811522051856 28.637120174392056 23.844873551028826 41 20.845153403149073 26.80669092051709 28.076041221726346 24.272114454607497 42 21.00236155911999 27.11109147236583 28.282248047172263 23.604298921341915 43 21.092405206231373 26.958007452903832 28.548942208082323 23.400645132782465 44 21.30499462389348 26.06238247438371 28.450748481679504 24.181874420043304 45 21.13020979089646 24.68099313134884 28.530972756150607 25.657824321604096 46 21.57345627187879 26.515153746827114 27.894873796513142 24.016516184780954 47 20.411038938722207 26.614820379125977 29.547474211872604 23.426666470279216 48 20.387668831838333 26.29686909303365 28.687886330942312 24.627575744185705 49 21.357528267518987 25.023198267862668 29.533334315270597 24.085939149347748 50 20.45640444032031 24.845958591705575 29.063477334433102 25.634159633541014 51 20.456993602678725 24.772313296903462 28.205264165672457 26.565428934745363 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 347.0 1 827.5 2 1308.0 3 3599.0 4 5890.0 5 3934.5 6 1979.0 7 1969.5 8 1960.0 9 1880.0 10 1800.0 11 1906.5 12 2013.0 13 2048.0 14 2083.0 15 2007.0 16 1931.0 17 1980.0 18 2029.0 19 2153.5 20 2278.0 21 2614.0 22 2950.0 23 3582.5 24 4215.0 25 5103.0 26 7495.0 27 8999.0 28 10568.5 29 12138.0 30 14990.5 31 17843.0 32 20375.0 33 22907.0 34 26302.5 35 29698.0 36 32186.0 37 34674.0 38 38616.0 39 42558.0 40 45398.0 41 48238.0 42 52029.0 43 55820.0 44 62200.0 45 68580.0 46 78371.0 47 88162.0 48 93712.5 49 99263.0 50 96973.0 51 94683.0 52 85000.0 53 75317.0 54 66969.0 55 58621.0 56 54436.5 57 50252.0 58 47245.0 59 44238.0 60 41218.0 61 38198.0 62 34424.0 63 30650.0 64 26658.0 65 22666.0 66 18485.0 67 14304.0 68 11521.5 69 8739.0 70 7528.5 71 6318.0 72 5036.0 73 3754.0 74 3017.0 75 1858.5 76 1437.0 77 1040.0 78 643.0 79 480.0 80 317.0 81 246.0 82 175.0 83 136.5 84 98.0 85 70.5 86 43.0 87 24.5 88 6.0 89 4.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1018395.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.93688921209953 #Duplication Level Percentage of deduplicated Percentage of total 1 71.77260933012563 20.768760446491466 2 9.930262207582851 5.7470179469584775 3 3.6253623102151784 3.147201225732535 4 1.890824046428104 2.188582638042551 5 1.2801760780292026 1.852215667095556 6 0.9570461496217382 1.66163630414824 7 0.755931557306937 1.531201540800449 8 0.6748500004203039 1.5622447757558122 9 0.6296515753820189 1.6398142091148076 >10 8.25290864741147 53.49562569053816 >50 0.1903866948910155 3.329157745050395 >100 0.036573333988490164 1.8564093630288752 >500 0.002050841158229171 0.436284389168904 >1k 0.0013672274388194475 0.7838480580738074 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3363 0.33022550189268407 No Hit GCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC 1899 0.18646988643895543 No Hit CCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC 1510 0.14827252686825837 No Hit CTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGCT 1153 0.1132173665424516 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.945811792084604E-4 0.0 0.0 0.13157959337977895 0.0 2 2.945811792084604E-4 0.0 0.0 0.641401420863221 0.0 3 2.945811792084604E-4 0.0 0.0 0.9456055852591578 0.0 4 2.945811792084604E-4 0.0 0.0 1.2552104046072496 0.0 5 2.945811792084604E-4 0.0 0.0 2.1624222428429047 0.0 6 2.945811792084604E-4 0.0 0.0 2.8449668350689072 0.0 7 2.945811792084604E-4 0.0 0.0 3.5141570805041265 0.0 8 2.945811792084604E-4 0.0 0.0 4.726555020399747 0.0 9 2.945811792084604E-4 0.0 0.0 5.225575537978878 0.0 10 2.945811792084604E-4 0.0 0.0 6.226955159834838 0.0 11 2.945811792084604E-4 0.0 0.0 7.347738352996627 0.0 12 2.945811792084604E-4 0.0 0.0 8.426298243805203 0.0 13 2.945811792084604E-4 0.0 0.0 8.83429317700892 0.0 14 2.945811792084604E-4 0.0 0.0 9.00593581076105 0.0 15 2.945811792084604E-4 0.0 0.0 9.313282174401877 0.0 16 2.945811792084604E-4 0.0 0.0 9.871611702728313 0.0 17 2.945811792084604E-4 0.0 0.0 10.553468938869496 0.0 18 2.945811792084604E-4 0.0 0.0 11.279513351891948 0.0 19 2.945811792084604E-4 0.0 0.0 11.750646851172679 0.0 20 2.945811792084604E-4 0.0 0.0 12.25663912332641 0.0 21 2.945811792084604E-4 0.0 0.0 12.866029389382312 0.0 22 2.945811792084604E-4 0.0 0.0 13.52893523632775 0.0 23 2.945811792084604E-4 0.0 0.0 14.130960972903441 0.0 24 2.945811792084604E-4 0.0 0.0 14.601407116099352 0.0 25 2.945811792084604E-4 0.0 0.0 15.043671659817655 0.0 26 3.927749056112805E-4 0.0 0.0 15.458343766416764 0.0 27 3.927749056112805E-4 0.0 0.0 15.911016845133764 0.0 28 3.927749056112805E-4 0.0 0.0 16.3439529848438 0.0 29 3.927749056112805E-4 0.0 0.0 16.80546349893705 0.0 30 3.927749056112805E-4 0.0 0.0 17.30045807373367 0.0 31 3.927749056112805E-4 0.0 0.0 17.778170552683388 0.0 32 3.927749056112805E-4 0.0 0.0 18.221711614844928 0.0 33 4.909686320141006E-4 0.0 0.0 18.66083395931834 0.0 34 4.909686320141006E-4 0.0 0.0 19.115470912563396 0.0 35 4.909686320141006E-4 0.0 0.0 19.582185694156 0.0 36 4.909686320141006E-4 0.0 0.0 20.029752699100055 0.0 37 4.909686320141006E-4 0.0 0.0 20.485175202156334 0.0 38 4.909686320141006E-4 0.0 0.0 20.984490300914675 0.0 39 4.909686320141006E-4 0.0 0.0 21.567270067115413 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAAGCG 20 7.032908E-4 45.0 1 TAACGCG 35 1.211738E-7 45.0 1 TGCGATA 20 7.032908E-4 45.0 1 TATCGCG 35 1.211738E-7 45.0 1 TATAGCG 75 0.0 42.0 1 TCACGAC 200 0.0 41.625 25 CGGTCTA 200 0.0 41.625 31 ACGGTCT 205 0.0 40.609756 30 ATAGACG 45 1.9279469E-8 40.000004 1 CACGACG 210 0.0 39.642857 26 GCGCGAC 105 0.0 38.57143 9 ACGGGTA 105 0.0 38.57143 5 CGTTTTT 1800 0.0 37.75 1 ACCGCTC 30 1.1398307E-4 37.499996 18 ATTCGCT 30 1.1398307E-4 37.499996 10 TCGTAAG 30 1.1398307E-4 37.499996 1 TATGCGG 145 0.0 37.241383 2 CGACGGT 225 0.0 37.0 28 TTTACGG 105 0.0 36.42857 2 AACGTAA 25 0.0021069958 36.0 41 >>END_MODULE