SRR3554411_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554411_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	217568
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1995	0.9169546992204736	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1107	0.5088064421238417	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	938	0.43112957787909983	No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT	847	0.3893035740550081	No Hit
TCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	522	0.239924988968966	No Hit
ACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	423	0.19442197381967938	No Hit
CGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTG	314	0.14432269451389912	No Hit
GCCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTG	282	0.12961464921311958	No Hit
GGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTG	252	0.11582585674363877	No Hit
GCCGCTGGTCTCCAATTACCAAGAATTCTCCAAAAATTAATTTTCTGCAGG	241	0.11076996617149582	No Hit
GGCCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	229	0.1052544491837035	No Hit
AGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTG	226	0.1038755699367554	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTC	30	2.157365E-6	45.000004	5
CGGGTCT	20	7.020667E-4	45.000004	6
TTTACGG	20	7.020667E-4	45.000004	2
CTATAGG	30	2.157365E-6	45.000004	2
GGCGTCC	40	6.7720975E-9	45.000004	6
CCAGCGG	20	7.020667E-4	45.000004	2
CGTCTAA	20	7.020667E-4	45.000004	13
TACGGGT	20	7.020667E-4	45.000004	4
CACTGCT	20	7.020667E-4	45.000004	16
GGATACG	20	7.020667E-4	45.000004	1
AGACGTC	20	7.020667E-4	45.000004	10
ACGTCTA	20	7.020667E-4	45.000004	12
GTTCACC	20	7.020667E-4	45.000004	34
TGCTAGT	20	7.020667E-4	45.000004	16
ACGTAGG	30	2.157365E-6	45.000004	2
CGGTCGC	20	7.020667E-4	45.000004	43
CAGTAGG	30	2.157365E-6	45.000004	2
AGGGCGT	20	7.020667E-4	45.000004	6
TCAAGCG	60	0.0	45.000004	17
GTAACCC	20	7.020667E-4	45.000004	13