SRR3554402_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554402_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	434318
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3111	0.7162954333000243	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1015	0.2336997315331163	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	936	0.21551029430048949	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	591	0.1360754101833219	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	446	0.10268973425001957	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTTG	20	7.028435E-4	45.0	1
CCGATTA	25	3.8867838E-5	45.0	11
GGTCCGA	25	3.8867838E-5	45.0	8
GTAGCCG	20	7.028435E-4	45.0	43
TGATTCG	55	1.8189894E-12	45.0	15
ACTCGGC	20	7.028435E-4	45.0	38
TTCGGCA	60	3.6379788E-12	41.250004	18
CGTTTTT	1765	0.0	41.17564	1
GTTGTAG	55	6.002665E-11	40.909092	1
AAGGGCG	190	0.0	40.263157	5
CCGATGT	45	1.9235813E-8	40.0	11
CGACGGT	40	3.4516052E-7	39.375	28
CGTTCGG	40	3.4516052E-7	39.375	45
GTACGAG	40	3.4516052E-7	39.375	1
CATACGG	35	6.2393156E-6	38.57143	2
CGATGTA	35	6.2393156E-6	38.57143	10
ACAACGA	135	0.0	38.333332	13
TAGGGAT	230	0.0	38.152176	5
CGTGATG	30	1.1387524E-4	37.500004	34
TAACGAG	30	1.1387524E-4	37.500004	1