SRR3554389_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554389_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	334537
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1832	0.547622535026021	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	1602	0.47887079755004675	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	1526	0.4561528321232031	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	1496	0.44718521419155427	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	1463	0.4373208344667406	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	684	0.20446168884159302	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	659	0.19698867389855232	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	613	0.18323832640335747	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	584	0.1745696290694303	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTT	536	0.16022144037879218	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	387	0.11568227131826972	No Hit
TCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	358	0.10701357398434252	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGG	40	6.7902874E-9	45.000004	2
CCGATCG	20	7.026107E-4	45.000004	40
CGCGCCT	20	7.026107E-4	45.000004	17
CGTAGCA	20	7.026107E-4	45.000004	31
TACGAAG	45	3.8380676E-10	45.000004	1
GGACGTA	20	7.026107E-4	45.000004	9
CGTAAGG	20	7.026107E-4	45.000004	2
CGATCGA	20	7.026107E-4	45.000004	41
ACGACGG	20	7.026107E-4	45.000004	2
GCATAAG	25	3.884857E-5	45.0	1
TTAACGG	30	2.160872E-6	44.999996	2
ACGAACG	30	2.160872E-6	44.999996	1
CTTAGAG	125	0.0	43.199997	21
ACGAAGG	75	0.0	42.000004	2
CGATGAA	365	0.0	41.91781	19
CCGATGA	360	0.0	41.875004	18
TGGGTAC	60	3.6379788E-12	41.249996	6
AGACACG	165	0.0	40.909092	24
ACGGGTA	55	6.002665E-11	40.90909	5
TCTTAGA	150	0.0	40.500004	20