SRR3554386_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554386_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	354400
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1405	0.3964446952595937	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	1325	0.37387133182844245	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGC	1170	0.33013544018058694	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC	1104	0.31151241534988716	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCG	1065	0.3005079006772009	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	766	0.21613995485327314	No Hit
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	708	0.19977426636568849	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	643	0.18143340857787812	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGGCAGAT	463	0.1306433408577878	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	30	2.1612377E-6	45.000004	2
TCCATAA	20	7.0266775E-4	45.0	30
GCGACAG	35	1.2087548E-7	45.0	1
CCGATCG	35	1.2087548E-7	45.0	40
GTTAGCG	20	7.0266775E-4	45.0	1
ACGATAT	20	7.0266775E-4	45.0	32
TACGATA	20	7.0266775E-4	45.0	31
GCTTACG	20	7.0266775E-4	45.0	28
TTACGAT	20	7.0266775E-4	45.0	30
CGCACGG	20	7.0266775E-4	45.0	2
CGATCGA	25	3.885328E-5	45.0	41
CGATCAT	20	7.0266775E-4	45.0	10
CGATATG	25	3.885328E-5	45.0	10
TCGAATG	45	3.8380676E-10	45.0	44
CCGTTGG	20	7.0266775E-4	45.0	2
CTTACGA	20	7.0266775E-4	45.0	29
TCGGCGT	140	0.0	41.785713	4
GCTACGA	65	0.0	41.53846	10
AGCTACG	65	0.0	41.53846	9
GGCACCG	60	3.6379788E-12	41.250004	8