SRR3554385_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554385_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	241413
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2159	0.8943180358969898	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGC	1865	0.7725350333246345	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTC	1828	0.7572086010281137	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCG	1675	0.6938317323425003	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	1566	0.6486808912527495	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	886	0.36700591931668963	No Hit
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	700	0.28995952993417917	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	674	0.27918960453662395	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTGCTAGT	587	0.24315177724480455	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	466	0.19303020135618215	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCC	407	0.1685907552617299	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT	400	0.1656911599623881	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTA	391	0.16196310886323437	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCT	323	0.1337956116696284	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTC	297	0.12302568627207318	No Hit
ACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	281	0.11639803987357764	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGCT	20	7.0222036E-4	45.000004	9
ACACCAC	20	7.0222036E-4	45.000004	25
ATAGCGG	20	7.0222036E-4	45.000004	2
CGCGCCT	20	7.0222036E-4	45.000004	17
CCGTCGA	20	7.0222036E-4	45.000004	41
TCAATTA	20	7.0222036E-4	45.000004	22
GCCGATC	20	7.0222036E-4	45.000004	9
CCCGTCG	20	7.0222036E-4	45.000004	40
ATGACGG	20	7.0222036E-4	45.000004	2
CGTCGAA	20	7.0222036E-4	45.000004	42
CGCACGG	20	7.0222036E-4	45.000004	2
GCGTAAG	20	7.0222036E-4	45.000004	1
TGCGTAG	20	7.0222036E-4	45.000004	1
CTGCGCT	25	3.8816237E-5	45.0	13
CATACGA	25	3.8816237E-5	45.0	18
CCGACGG	25	3.8816237E-5	45.0	2
ATACGAA	25	3.8816237E-5	45.0	19
TCGCGAG	25	3.8816237E-5	45.0	1
GCGATAT	30	2.1583564E-6	44.999996	9
GCATACC	30	2.1583564E-6	44.999996	13