##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554385_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 241413 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.934870947297785 33.0 31.0 34.0 30.0 34.0 2 32.030516169386075 33.0 31.0 34.0 30.0 34.0 3 32.05748240566995 33.0 31.0 34.0 30.0 34.0 4 35.67764784829318 37.0 35.0 37.0 33.0 37.0 5 35.75824002849888 37.0 35.0 37.0 35.0 37.0 6 35.77070000372805 37.0 35.0 37.0 35.0 37.0 7 35.93823447784502 37.0 35.0 37.0 35.0 37.0 8 35.877148289445884 37.0 35.0 37.0 35.0 37.0 9 37.71698292966825 39.0 38.0 39.0 35.0 39.0 10 37.34423166937986 39.0 37.0 39.0 34.0 39.0 11 37.31654053427115 39.0 37.0 39.0 34.0 39.0 12 37.21172430647894 39.0 37.0 39.0 34.0 39.0 13 37.130125552476464 39.0 37.0 39.0 33.0 39.0 14 38.28902751715939 40.0 38.0 41.0 33.0 41.0 15 38.382808713698104 40.0 38.0 41.0 34.0 41.0 16 38.467551457460864 40.0 38.0 41.0 34.0 41.0 17 38.39053406403135 40.0 37.0 41.0 34.0 41.0 18 38.345209247223636 40.0 37.0 41.0 34.0 41.0 19 38.23389378368191 40.0 37.0 41.0 34.0 41.0 20 38.022355879757924 40.0 36.0 41.0 34.0 41.0 21 38.029178213269375 40.0 36.0 41.0 34.0 41.0 22 38.038137962744344 40.0 36.0 41.0 34.0 41.0 23 37.920136860898126 40.0 35.0 41.0 34.0 41.0 24 37.882139735639754 40.0 35.0 41.0 34.0 41.0 25 37.81222635069363 40.0 35.0 41.0 34.0 41.0 26 37.789191137179856 40.0 35.0 41.0 34.0 41.0 27 37.68166585892226 40.0 35.0 41.0 33.0 41.0 28 37.588974081760306 40.0 35.0 41.0 33.0 41.0 29 37.59413536139313 40.0 35.0 41.0 33.0 41.0 30 37.41151056488259 40.0 35.0 41.0 33.0 41.0 31 37.35003914453654 40.0 35.0 41.0 33.0 41.0 32 37.09047151561846 40.0 35.0 41.0 32.0 41.0 33 36.92830957736327 40.0 35.0 41.0 31.0 41.0 34 36.70166892420872 40.0 35.0 41.0 31.0 41.0 35 36.53889392866167 40.0 35.0 41.0 30.0 41.0 36 36.40696234254162 40.0 35.0 41.0 30.0 41.0 37 36.29172414078778 39.0 35.0 41.0 30.0 41.0 38 36.261477219536644 39.0 35.0 41.0 30.0 41.0 39 36.1951634750407 39.0 35.0 41.0 30.0 41.0 40 36.14107359587098 39.0 35.0 41.0 29.0 41.0 41 36.098358414832674 39.0 35.0 41.0 29.0 41.0 42 36.020280597979394 39.0 35.0 41.0 29.0 41.0 43 35.93212047404241 39.0 35.0 41.0 29.0 41.0 44 35.89467841416991 39.0 35.0 41.0 28.0 41.0 45 35.834023022786674 39.0 35.0 41.0 27.0 41.0 46 35.76483867894438 39.0 35.0 41.0 27.0 41.0 47 35.621905199802825 39.0 35.0 41.0 27.0 41.0 48 35.620819922705074 39.0 35.0 41.0 27.0 41.0 49 35.56842837792497 39.0 35.0 41.0 27.0 41.0 50 35.4519764884244 38.0 35.0 41.0 27.0 41.0 51 34.684905121099526 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 5.0 11 5.0 12 6.0 13 8.0 14 12.0 15 11.0 16 23.0 17 45.0 18 76.0 19 153.0 20 357.0 21 621.0 22 875.0 23 1317.0 24 1766.0 25 2498.0 26 3238.0 27 3499.0 28 3438.0 29 3321.0 30 3718.0 31 4336.0 32 5256.0 33 7239.0 34 12953.0 35 19967.0 36 15611.0 37 22461.0 38 41290.0 39 87206.0 40 98.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.09554994967131 19.275266866324515 23.589450443845195 16.03973274015898 2 34.26658879182148 26.105470707874055 23.15616806054355 16.471772439760908 3 28.608649907005834 26.57810474166677 29.401896335325773 15.411349016001624 4 26.302643188229304 22.65453807375742 33.17592673136907 17.866892006644218 5 26.272404551536166 26.47123394349103 27.91647508626296 19.339886418709845 6 23.110188763653987 34.7881017178031 27.71888837800781 14.382821140535098 7 73.26821670746811 5.287204914399805 16.61426683732856 4.830311540803519 8 73.98731634170488 7.678956808456877 12.4193808949808 5.914345954857443 9 69.59940019800094 5.845998351372959 14.604018839084887 9.950582611541217 10 37.550173354376106 22.418428170811016 23.41713163748431 16.61426683732856 11 30.3753319001048 23.969711655958875 27.650126546623422 18.004829897312906 12 25.60591186058746 20.596653867024557 32.205804989789286 21.591629282598703 13 24.47714083334369 23.10977453575408 34.08888502276182 18.324199608140407 14 19.686180943031236 28.386623752656238 31.007029447461402 20.92016585685112 15 18.16679300617614 23.59939191344294 37.549759126476204 20.68405595390472 16 19.847729823994563 22.734898286339178 33.85898853831401 23.558383351352248 17 20.291782132693765 23.62300290373758 31.767966099588673 24.317248863979984 18 21.80329973945065 21.773061102757516 32.98993840431129 23.43370075348055 19 21.121480616205424 24.9497748671364 30.983004229266857 22.945740287391317 20 23.29493440701205 24.473412782244537 32.343328652558064 19.88832415818535 21 21.626838654090708 27.288919817905416 31.63168512051961 19.45255640748427 22 19.085964716067487 23.453583692676037 32.32178880176295 25.13866278949352 23 19.47616739777891 25.97167509620443 31.65736725031378 22.894790255702883 24 21.20018391718756 24.986226922328125 31.63872699481801 22.174862165666305 25 19.466640156081073 27.4194016063758 29.67114447026465 23.44281376727848 26 19.095077729865416 25.216123406775942 33.02141972470414 22.667379138654507 27 22.387775306217975 24.432404220153845 32.0057329141347 21.174087559493483 28 17.78321797086321 25.686272073169214 34.76656186700799 21.763948088959584 29 22.330611856030952 21.823596906546044 33.455530563805596 22.39026067361741 30 21.04484845472282 24.929891927940915 32.90667859643018 21.11858102090608 31 22.50665871349099 23.491692659467386 30.364561974707243 23.637086652334382 32 25.143633524292397 26.53585349587636 28.025831251838135 20.294681727993108 33 22.92171506919677 23.04391229966903 29.283841383852565 24.75053124728163 34 22.560094112578856 22.457779821302086 32.095620368414295 22.886505697704763 35 22.501273750792212 23.908820154672696 30.28751558532473 23.30239050921036 36 24.95723096933471 24.413763964658074 30.48593074937969 20.143074316627523 37 22.37700538082042 23.417545865384216 33.95923169009125 20.24621706370411 38 22.101129599483045 25.360688943843122 27.980680410748388 24.55750104592545 39 24.32801878937754 23.112259903153518 29.595754992481766 22.96396631498718 40 22.57832014017472 22.681462887251307 30.6458227187434 24.094394253830572 41 21.386172244245337 23.953142539962638 29.8550616578229 24.805623557969124 42 23.427901562881868 24.204164647305653 29.88654297821575 22.481390811596725 43 25.206181937178197 22.855438605211813 29.43669147891787 22.501687978692118 44 23.186406697236688 22.246109364450135 30.391072560301225 24.176411378011956 45 22.079175520788027 22.366235455422864 29.611909880578096 25.942679143211013 46 24.931548839540536 23.668567972727235 28.870856167646313 22.529027020085913 47 20.196095487815484 24.637861258507204 33.45925861490475 21.70678463877256 48 21.512925981616565 23.64330007083297 30.34343635181204 24.500337595738422 49 22.54352499658262 20.560201811832833 33.12373401598091 23.772539175603633 50 21.89277296583034 21.125208667304577 31.899276343858862 25.082742023006215 51 21.911827449226013 21.108225323408433 28.855529735349794 28.12441749201576 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 147.0 1 237.0 2 327.0 3 2005.0 4 3683.0 5 2455.0 6 1227.0 7 1267.0 8 1307.0 9 1266.5 10 1226.0 11 1218.0 12 1210.0 13 1183.0 14 1156.0 15 1126.5 16 1097.0 17 1044.5 18 992.0 19 920.0 20 848.0 21 844.0 22 840.0 23 907.0 24 974.0 25 979.0 26 1070.0 27 1156.0 28 1505.0 29 1854.0 30 2130.5 31 2407.0 32 2684.5 33 2962.0 34 3851.5 35 4741.0 36 5056.0 37 5371.0 38 6001.5 39 6632.0 40 7703.0 41 8774.0 42 10373.0 43 11972.0 44 13770.5 45 15569.0 46 22114.5 47 28660.0 48 28648.5 49 28637.0 50 28083.5 51 27530.0 52 24172.5 53 20815.0 54 18047.5 55 15280.0 56 13168.0 57 11056.0 58 10068.0 59 9080.0 60 7921.5 61 6763.0 62 6149.5 63 5536.0 64 4762.5 65 3989.0 66 3253.5 67 2518.0 68 1949.0 69 1380.0 70 1218.0 71 1056.0 72 917.5 73 779.0 74 580.5 75 295.0 76 208.0 77 204.0 78 200.0 79 136.0 80 72.0 81 42.0 82 12.0 83 7.0 84 2.0 85 1.0 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 241413.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.842978629982646 #Duplication Level Percentage of deduplicated Percentage of total 1 74.59476176257304 28.974827370522714 2 9.654267798489954 7.500010355697498 3 3.558631574457194 4.146835505958668 4 1.9163502964637633 2.9774701445241143 5 1.3650130102802542 2.6510585593982094 6 1.102674572367018 2.5698698910166398 7 0.9256494475962974 2.5168487198286753 8 0.7731519003540502 2.4025218194546274 9 0.644115514225995 2.2517428638888544 >10 5.3651409802499685 35.28558942559017 >50 0.06398498485688692 1.6743091714199319 >100 0.02666041035703622 2.103035047822611 >500 0.004265665657125795 1.1793068310322974 >1k 0.005332082071407243 3.7665742938449878 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2159 0.8943180358969898 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGC 1865 0.7725350333246345 No Hit GAATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTC 1828 0.7572086010281137 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCG 1675 0.6938317323425003 No Hit GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC 1566 0.6486808912527495 No Hit CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC 886 0.36700591931668963 No Hit CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT 700 0.28995952993417917 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 674 0.27918960453662395 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTGCTAGT 587 0.24315177724480455 No Hit TCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC 466 0.19303020135618215 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCC 407 0.1685907552617299 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCT 400 0.1656911599623881 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTA 391 0.16196310886323437 No Hit GAACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCT 323 0.1337956116696284 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTC 297 0.12302568627207318 No Hit ACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC 281 0.11639803987357764 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2974156321324867 0.0 2 0.0 0.0 0.0 1.6660246134218124 0.0 3 0.0 0.0 0.0 2.20286397169995 0.0 4 0.0 0.0 0.0 2.912436364238877 0.0 5 0.0 0.0 0.0 5.034525895457163 0.0 6 0.0 0.0 0.0 5.916002866457068 0.0 7 0.0 0.0 0.0 6.88819574753638 0.0 8 0.0 0.0 0.0 8.486701213273518 0.0 9 0.0 0.0 0.0 9.080704021738681 0.0 10 4.1422789990597025E-4 0.0 0.0 11.129060986773704 0.0 11 4.1422789990597025E-4 0.0 0.0 13.016283298745304 0.0 12 4.1422789990597025E-4 0.0 0.0 15.181038303653905 0.0 13 4.1422789990597025E-4 0.0 0.0 15.851673273601671 0.0 14 4.1422789990597025E-4 0.0 0.0 16.09731041824591 0.0 15 4.1422789990597025E-4 0.0 0.0 16.68137175711333 0.0 16 4.1422789990597025E-4 0.0 0.0 17.61338453190176 0.0 17 4.1422789990597025E-4 0.0 0.0 18.676707550960387 0.0 18 4.1422789990597025E-4 0.0 0.0 20.02709050465385 0.0 19 4.1422789990597025E-4 0.0 0.0 20.903596740854884 0.0 20 4.1422789990597025E-4 0.0 0.0 21.544821529909324 0.0 21 4.1422789990597025E-4 0.0 0.0 22.27220572214421 0.0 22 4.1422789990597025E-4 0.0 0.0 22.993376495880504 0.0 23 4.1422789990597025E-4 0.0 0.0 23.704605800019053 0.0 24 4.1422789990597025E-4 0.0 0.0 24.28203949248798 0.0 25 4.1422789990597025E-4 0.0 0.0 24.797338999971004 0.0 26 4.1422789990597025E-4 0.0 0.0 25.298968986757135 0.0 27 4.1422789990597025E-4 0.0 0.0 25.84616404253292 0.0 28 4.1422789990597025E-4 0.0 0.0 26.363948917415385 0.0 29 4.1422789990597025E-4 0.0 0.0 26.887118754996624 0.0 30 4.1422789990597025E-4 0.0 0.0 27.441769912970717 0.0 31 4.1422789990597025E-4 0.0 0.0 27.968253573751205 0.0 32 4.1422789990597025E-4 0.0 0.0 28.45621403984044 0.0 33 4.1422789990597025E-4 0.0 0.0 28.95784402662657 0.0 34 4.1422789990597025E-4 0.0 0.0 29.459059785512792 0.0 35 4.1422789990597025E-4 0.0 0.0 29.997141827490648 0.0 36 4.1422789990597025E-4 0.0 0.0 30.459834391685618 0.0 37 4.1422789990597025E-4 0.0 0.0 30.96312129007137 0.0 38 4.1422789990597025E-4 0.0 0.0 31.4369980075638 0.0 39 4.1422789990597025E-4 0.0 0.0 31.96223898464457 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGCT 20 7.0222036E-4 45.000004 9 ACACCAC 20 7.0222036E-4 45.000004 25 ATAGCGG 20 7.0222036E-4 45.000004 2 CGCGCCT 20 7.0222036E-4 45.000004 17 CCGTCGA 20 7.0222036E-4 45.000004 41 TCAATTA 20 7.0222036E-4 45.000004 22 GCCGATC 20 7.0222036E-4 45.000004 9 CCCGTCG 20 7.0222036E-4 45.000004 40 ATGACGG 20 7.0222036E-4 45.000004 2 CGTCGAA 20 7.0222036E-4 45.000004 42 CGCACGG 20 7.0222036E-4 45.000004 2 GCGTAAG 20 7.0222036E-4 45.000004 1 TGCGTAG 20 7.0222036E-4 45.000004 1 CTGCGCT 25 3.8816237E-5 45.0 13 CATACGA 25 3.8816237E-5 45.0 18 CCGACGG 25 3.8816237E-5 45.0 2 ATACGAA 25 3.8816237E-5 45.0 19 TCGCGAG 25 3.8816237E-5 45.0 1 GCGATAT 30 2.1583564E-6 44.999996 9 GCATACC 30 2.1583564E-6 44.999996 13 >>END_MODULE