SRR3554379_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554379_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	154925
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2282	1.472970792318864	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	1358	0.8765531708891399	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	1345	0.8681620138776828	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC	1318	0.8507342262385025	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	794	0.5125060513151525	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAAGACT	580	0.37437469743424234	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA	300	0.19364208487978055	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	296	0.1910601904147168	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT	278	0.17944166532192996	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	260	0.16782314022914313	TruSeq Adapter, Index 14 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT	254	0.16395029853154752	No Hit
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT	228	0.14716798450863322	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC	219	0.1413587219622398	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	167	0.10779409391641116	No Hit
GAATATGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC	159	0.10263030498628369	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	157	0.1013393577537518	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTAGG	30	2.1533142E-6	45.000004	2
CGGCGAG	70	0.0	45.000004	31
CAAACGA	30	2.1533142E-6	45.000004	15
ACGATGA	30	2.1533142E-6	45.000004	18
GCGATCC	30	2.1533142E-6	45.000004	33
TAATACG	50	2.1827873E-11	45.0	4
ACACGAA	25	3.8751412E-5	45.0	45
CGCGGAT	25	3.8751412E-5	45.0	23
GGCGTAA	20	7.014378E-4	45.0	7
CGCGATA	20	7.014378E-4	45.0	43
TCGATCA	20	7.014378E-4	45.0	17
GTAATAG	20	7.014378E-4	45.0	1
AATGCGG	20	7.014378E-4	45.0	2
TGACCTT	20	7.014378E-4	45.0	35
CACTCGA	40	6.7502697E-9	45.0	41
GCCGACT	40	6.7502697E-9	45.0	43
CGCTCGA	20	7.014378E-4	45.0	41
CCGAGAA	20	7.014378E-4	45.0	18
CGAATGC	100	0.0	45.0	45
CGGGAGT	45	3.8016879E-10	45.0	6